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bl_sam_buff_check_order(3) Library Functions Manual bl_sam_buff_check_order(3)

NAME
       bl_sam_buff_check_order() - Check sort order of SAM records

LIBRARY
       #include	<biolibc/sam-buff.h>
       -lbiolibc -lxtend

SYNOPSIS
       void    bl_sam_buff_check_order(bl_sam_buff_t *sam_buff,
       bl_sam_t	*sam_alignment)

ARGUMENTS
       sam_buff	       Pointer to a SAM	buffer with recent alignments
       sam_alignment   Pointer to the most recently read alignment

DESCRIPTION
       Check  that  the	newly read SAM alignment comes after the previous one,
       assuming	the input is sorted first by chrom  and	 then  position.   The
       previous	 chrom and position are	stored in sam_buff (and	initialized so
       that the	first SAM alignment read is always OK).

SEE ALSO
       bl_sam_read(3)

						    bl_sam_buff_check_order(3)

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