Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
cif2pdb(1)			 User Commands			    cif2pdb(1)

NAME
       cif2pdb - Convert the contents of a mmCIF file into PDB format

SYNOPSIS
       cif2pdb [OPTION]	input [output]

DESCRIPTION
       This tools attempts to write out	the contents of	a mmCIF	file in	PDB
       format.

       Note that this will likely drop lots of information that	cannot be
       represented in PDB format and might even	fail completely	due to too
       many atoms or other overruns.

       Like most of the	other cif-tools	this file can read compressed mmCIF
       files directly.

OPTIONS
       If no output file is given, the result is printed to /fIstdout.

       --dict=<file>
	      The mmCIF	dictionary file	to use.	The default is mmcif_pdbx.

       --no-validate
	      Omit  the	 validation  of	 the input mmCIF file. This will force
	      output even in case the input file contains errors.

       --verbose,-V
	      Be more verbose, useful to diagnose validation errors.

AUTHOR
       Written by Maarten L. Hekkelman <maarten@hekkelman.com>

REPORTING BUGS
       Report bugs at https://github.com/PDB-REDO/cif-tools/issues

SEE ALSO
       cif-diff, cif-grep, cif-merge, cif-validate, mmCQL, pdb2cif.

version	1.0.5			  2022-11-20			    cif2pdb(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=cif2pdb&sektion=1&manpath=FreeBSD+Ports+14.3.quarterly>

home | help