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CSG_FLUCTUATIONS(1)	    General Commands Manual	   CSG_FLUCTUATIONS(1)

NAME
       csg_fluctuations	- Part of the VOTCA package

SYNOPSIS
       csg_fluctuations	[OPTIONS]

       csg_fluctuations	[--help]

DESCRIPTION
       calculate density fluctuations in subvolumes of the simulation
       box.Subolumes can be either cubic slabs in dimensions (x|y|z) or
       sphericalslabs with respect to either the center	of box or a reference
       molecule

OPTIONS
       Allowed options:

	 -h [ --help ]			      display this help	and exit
	 --verbose			      be loud and noisy
	 --verbose1			      be very loud and noisy
	 -v [ --verbose2 ]		      be extremly loud and noisy
	 --top arg			      atomistic	topology file

       Fluctuation options:

	 --filter arg (=*)		    filter molecule names
	 --rmax	arg			    maximal distance to	be considered
	 --rmin	arg (=0)		    minimal distance to	be considered
	 --refmol arg			    Reference molecule
	 --nbin	arg (=100)		    Number of bins
	 --geometry arg			    (sphere|x|y|z) Take	radial or x,
       y, z
					    slabs from rmin to rmax
	 --outfile arg (=fluctuations.dat)  Output file

       Mapping options:

	 --cg arg			      coarse graining mapping and bond
					    definitions	(xml-file)
	 --map-ignore arg		      list of molecules	to ignore
       separated by
					    ;
	 --no-map			      disable mapping and act on
       original
					    trajectory

       Trajectory options:

	 --trj arg			      atomistic	trajectory file
	 --begin arg (=0)		      skip frames before this time
       (only works
					    for	Gromacs	files)
	 --first-frame arg (=0)		      start with this frame
	 --nframes arg			      process the given	number of
       frames

AUTHORS
       Written and maintained by the VOTCA Development Team <devs@votca.org>

COPYRIGHT
       Copyright 2009-2024 The VOTCA Development Team (http://www.votca.org)

       Licensed	under the Apache License, Version 2.0 (the "License"); you may
       not use this  file except in compliance with the	License.  You may
       obtain a	copy of	the License at

	      http://www.apache.org/licenses/LICENSE-2.0

       Unless  required	by applicable law or agreed to in writing, software
       distributed under the License is	distributed on an "AS IS" BASIS,
       WITHOUT WARRANTIES OR CONDITIONS	OF ANY	KIND, either  express  or
       implied.	  See  the  License  for  the  specific	 language  governing
       permissions and limitations under the License.

VOTCA Development Team	  csg_fluctuations User	Manual	   CSG_FLUCTUATIONS(1)

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