Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
CSG_SPHERICALORDER(1)	    General Commands Manual	 CSG_SPHERICALORDER(1)

NAME
       csg_sphericalorder - Part of the	VOTCA package

SYNOPSIS
       csg_sphericalorder [OPTIONS]

       csg_sphericalorder [--help]

DESCRIPTION
       !! EXPERIMENTAL !! Calculate spherical order parameter.
	Needs non-spherical beads in mapping.

OPTIONS
       Allowed options:

	 -h [ --help ]		   display this	help and exit
	 --verbose		   be loud and noisy
	 --verbose1		   be very loud	and noisy
	 -v [ --verbose2 ]	   be extremly loud and	noisy
	 --top arg		   atomistic topology file
	 --filter arg (=*)	 filter	molecule names
	 --radialcut arg (=0)	 radial	cutoff:	distance from center where
       bead is
				 considered
	 --minrad arg (=0)	 minimal distance a parcle has to be apart
       from center
				 to be considerd
	 --refmol arg		 Reference molecule
	 --rbinw arg (=0)	 Do multiple r_bins multiple histograms

       Mapping options:

	 --cg arg		   coarse graining mapping and bond
       definitions
				 (xml-file)
	 --map-ignore arg	   list	of molecules to	ignore separated by ;
	 --no-map		   disable mapping and act on original
       trajectory

       Trajectory options:

	 --trj arg		   atomistic trajectory	file
	 --begin arg (=0)	   skip	frames before this time	(only works
       for
				 Gromacs files)
	 --first-frame arg (=0)	   start with this frame
	 --nframes arg		   process the given number of frames

AUTHORS
       Written and maintained by the VOTCA Development Team <devs@votca.org>

COPYRIGHT
       Copyright 2009-2024 The VOTCA Development Team (http://www.votca.org)

       Licensed	under the Apache License, Version 2.0 (the "License"); you may
       not use this  file except in compliance with the	License.  You may
       obtain a	copy of	the License at

	      http://www.apache.org/licenses/LICENSE-2.0

       Unless  required	by applicable law or agreed to in writing, software
       distributed under the License is	distributed on an "AS IS" BASIS,
       WITHOUT WARRANTIES OR CONDITIONS	OF ANY	KIND, either  express  or
       implied.	  See  the  License  for  the  specific	 language  governing
       permissions and limitations under the License.

VOTCA Development Team	 csg_sphericalorder User Manual	 CSG_SPHERICALORDER(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=csg_sphericalorder&sektion=1&manpath=FreeBSD+Ports+14.3.quarterly>

home | help