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GBSEQGET(1) NCBI Tools User's Manual GBSEQGET(1) NAME gbseqget - format sequences from GenBank as an XML GBSet SYNOPSIS gbseqget [-] [-d filename] [-i filename] [-m n/p/b] [-n] [-o filename] [-v] DESCRIPTION gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML GB- Set document. OPTIONS A summary of options is included below. - Print usage message -d filename Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line) -i filename Input file name for GI list (default = stdin) -m n/p/b Molecule type: n Nucleotide (default) p Protein b Both -n Return only new records (for which the given GI refers to an old version) -o filename Output file name for the XML GBSet (default = stdout) -v Fetch SNP Variations NOTES The GBSet format is deprecated in favor of INSDSet, which you can pro- duce by running insdseqget in place of gbseqget. AUTHOR The National Center for Biotechnology Information. SEE ALSO asn2gb(1), insdseqget(1). NCBI 2006-04-14 GBSEQGET(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | NOTES | AUTHOR | SEE ALSO
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