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LOCARNA...IGN-ALL(1)  User Contributed Perl Documentation LOCARNA...IGN-ALL(1)

NAME
       locarnap-realign-all

SYNOPSIS
       locarnap-realign-all [options] <annotation-file>

DESCRIPTION
       Calls mlocarna on sequence sets in Realign-Sequences as generated by a
       call to locarnap-revisit-RNAz-hits.pl. The script is usually used as
       second step in a	pipeline for refining RNAz hits	with LocARNA-P.

OPTIONS
       --help
	   Brief help message

       --man
	   Full	documentation

       --test
	   Test	only. Jobs are not run or submitted to SGE!

       --revcompl
	   Realign reverse complement

       --run-locally
	   Run the realignment on the local machine (without the use of	SGE).

       --threads=k
	   Use <k> threads for multicore support.

       Writes  result  files  to  Alignment-Results, takes alignment jobs from
       annotation file

       Unless option --run-locally is given, distribute	jobs  to  SGE-cluster,
       where we	assume that the	script is run on a submission host!

perl v5.32.1			  2022-11-19		  LOCARNA...IGN-ALL(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=locarnap-realign-all.pl&sektion=1&manpath=FreeBSD+Ports+15.0>

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