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SEGMENTFST(1) segmentFst (VCF statistics) SEGMENTFST(1) NAME segmentFst SYNOPSIS segmentFst -s 0.7 -f wcFst.output.txt DESCRIPTION segmentFst creates genomic segments (bed file) for regions with high wcFst OPTIONS **segmentFst** provides a way to find continious regions with high Fst values. It takes the output of wcFst and produces a BED file. These high Fst region can be permutated with 'permuteGPATwindow' Output : 8 columns : 1. Seqid 2. Start (zero based) 3. End (zero based) 4. Average Fst 5. Average high Fst (Fst > -s) 6. N Fst values in segment 7. N high fst values in segment 8. Segment length required: -f -- Output from wcFst optional: -s -- High Fst cutoff [0.8] Type: statistics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. segmentFst (vcflib) SEGMENTFST(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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