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VCFCHECK(1) vcfcheck (VCF metrics) VCFCHECK(1) NAME vcfcheck SYNOPSIS vcfcheck options DESCRIPTION Validate integrity and identity of the VCF by verifying that the VCF record's REF matches a given reference file. OPTIONS options: -f, --fasta-reference FASTA reference file to use to obtain primer sequences. -x, --exclude-failures If a record fails, don't print it. Otherwise do. -k, --keep-failures Print if the record fails, otherwise not. -i, --ignore-case Ignore case differences between FASTA reference and vcf. -h, --help Print this message. -v, --version Print version. Type: metrics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfcheck (vcflib) VCFCHECK(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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