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bl_fastq_5p_trim(3) Library Functions Manual bl_fastq_5p_trim(3) NAME bl_fastq_5p_trim() - Trim 5' end of a FASTQ object LIBRARY #include <biolibc/fastq.h> -lbiolibc -lxtend SYNOPSIS size_t bl_fastq_5p_trim(bl_fastq_t *read, size_t cut_pos) ARGUMENTS read FASTQ read to be trimmed cut_pos New length and location of the null terminators DESCRIPTION Trim the 5' end of a FASTQ sequence and quality string at location cut_pos. RETURN VALUES BL_FASTQ_DATA_OK if cut_pos is between 0 and original length, BL_FASTQ_DATA_INVALID otherwise. EXAMPLES bl_fastq_t read; char *adapter; size_t index; index = bl_fastq_find_adapter_smart(&read, adapter, 3, 10); if ( BL_FASTQ_SEQ_AE(&read, index) != '0' ) bl_fastq_5p_trim(&read, index); SEE ALSO bl_fastq_find_adapter_smart(3), bl_fastq_find_adapter_exact(3) bl_fastq_5p_trim(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
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