FreeBSD Manual Pages
heatmap(1) General Commands Manual heatmap(1) SYNOPSIS fasda heatmap [--debug] features-file cond1-file cond2-file ARGUMENTS --debug Show Python data structures used for heatmap features-file Reduced feature list, one per line cond[12]-file Full normalized counts lists output by FASDA DESCRIPTION Generate a heatmap from a filtered FASDA fold-change list. The fea- tures file provided by the first argument is a greatly reduced list of significant DEGs (differentially expressed genes) or transcripts, one per line: YKL103C_mRNA YIR015W_mRNA YLR054C_mRNA YER011W_mRNA The normalized counts files are the output of "fasda normalize". RETURN VALUES 0 on success, non-zero error codes otherwise EXAMPLES heatmap features.txt \ Results/11-fasda-kallisto/cond1-norm-3.tsv \ Results/11-fasda-kallisto/cond2-norm-3.tsv SEE ALSO fasda-normalize(1), fasda-fold-change(1), fasda(1) heatmap(1)
SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=fasda-heatmap&sektion=1&manpath=FreeBSD+Ports+15.0.quarterly>