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ASN2FF(1)		    NCBI Tools User's Manual		       ASN2FF(1)

NAME
     asn2ff - convert ASN.1 biological data to a flat format (old version)

SYNOPSIS
     asn2ff  [-]  [-A X]  [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename]
     [-b]  [-d]  [-e]  [-f b/p/e/s/x/z]   [-g]	 [-h F]   [-k F]   [-l filename]
     [-m r/d/s/c/k/l/e/p]  [-n F]  [-o filename]  [-p F] [-q] [-r filename] [-s]
     [-t] [-v F] [-w] [-y] [-z]

DESCRIPTION
     asn2ff converts descriptions of biological sequences from NCBI's ASN.1 for-
     mat to one of several flat-file formats.  This program is	built  around  a
     deprecated interface; please use asn2gb(1) instead.

OPTIONS
     A summary of options is included below.

     -	    Print usage message

     -A X   Show region starting at X (default is 0)

     -B X   Show region ending at X (default is last position)

     -C     Show Bankit comments

     -G     Output is one top bioseq only in genome view

     -L F   Use old (pre-Genbank 127.0) LOCUS line format

     -M     Output is map bioseqs only

     -R     For GenBank Release

     -V F   Don't use VERSION

     -a filename
	    Filename for ASN.1 input (default is stdin)

     -b     Input asnfile in binary mode

     -d     Use SeqMgr indexing

     -e     Input is a Seq-entry

     -f b/p/e/s/x/z
	    Output Format:
	    b	   GenBank (default)
	    p	   GenPept
	    e	   EMBL
	    s	   PseudoEMBL
	    x	   GenBankSelect
	    z	   EMBLPEPT

     -g     Show gi numbers

     -h F   Hide sequence

     -k F   Don't use complex sets (phy-set,mut-set, pop-set)

     -l filename
	    Log errors to filename

     -m r/d/s/c/k/l/e/p
	    Output mode:
	    r	   release (default)
	    d	   dump
	    s	   Sequin
	    c	   Chromoscope
	    k	   dir-sub-debug
	    l	   dir-sub
	    e	   revise
	    p	   partial report

     -n F   Strict gene_binding

     -o filename
	    Output Filename (default is stdout)

     -p F   Omit new gene features

     -q     Output is one top bioseq only

     -r filename
	    Output error logfile (default is stderr)

     -s     Input is a Seq-submit

     -t     Show verbose message text

     -v F   Suppress error messages

     -w     Use HTML output format

     -y     Print help format only

     -z     New algorithm for orgnames

AUTHOR
     The National Center for Biotechnology Information.

SEE ALSO
     asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).

NCBI				   2005-05-16			       ASN2FF(1)

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