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dgscat(1) PT-Scotch user's manual dgscat(1) NAME dgscat - build distributed source graph file fragments from a centralized source graph file SYNOPSIS dgscat [options] [igfile] [ogfile] DESCRIPTION The dgscat program reads a centralized source graph igfile and writes it back on the form of a set of files ogfile representing fragments of a dis- tributed source graph. When file names are not specified, data is read from standard input and written to standard output. Standard streams can also be explicitly repre- sented by a dash '-'. When the proper libraries have been included at compile time, dgord can di- rectly handle compressed graphs, both as input and output. A stream is treated as compressed whenever its name is postfixed with a compressed file extension, such as in 'brol.grf.bz2' or '-.gz'. The compression formats which can be supported are the bzip2 format ('.bz2'), the gzip format ('.gz'), and the lzma format ('.lzma', on input only). dgord bases on implementations of the MPI interface to spread work across the processing elements. It is therefore not likely to be run directly, but instead through some launcher command such as mpirun. DISTRIBUTED FILE NAMES In order to tell whether programs should read from, or write to, a single file located on only one processor, or to multiple instances of the same file on all of the processors, or else to distinct files on each of the processors, a special grammar has been designed, which is based on the '%' escape character. Four such escape sequences are defined, which are inter- preted independently on every processor, prior to file opening. By default, when a filename is provided, it is assumed that the file is to be opened on only one of the processors, called the root processor, which is usually process 0 of the communicator within which the program is run. The index of the root processor can be changed by means of the -r option. Using any of the first three escape sequences below will instruct programs to open in parallel a file of name equal to the interpreted filename, on every proces- sor on which they are run. %p Replaced by the number of processes in the global communicator in which the program is run. Leads to parallel opening. %r Replaced on each process running the program by the rank of this process in the global communicator. Leads to parallel opening. %- Discarded, but leads to parallel opening. This sequence is mainly used to instruct programs to open on every processor a file of iden- tical name. The opened files can be, according whether the given path leads to a shared directory or to directories that are local to each processor, either to the opening of multiple instances of the same file, or to the opening of distinct files which may each have a different content, respectively (but in this latter case it is much recommended to identify files by means of the '%r' sequence). %% Replaced by a single '%' character. File names using this escape se- quence are not considered for parallel opening, unless one or sev- eral of the three other escape sequences are also present. For instance, filename 'brol' will lead to the opening of file 'brol' on the root processor only, filename '%-brol' (or even 'br%-ol') will lead to the parallel opening of files called 'brol' on every processor, and file- name 'brol%p-%r' will lead to the opening of files on which the program were to run. OPTIONS -c Check the consistency of the input source graph after loading it into memory. -h Display some help. -rpnum Set root process for centralized files (default is 0). -V Display program version and copyright. EXAMPLE Run dgscat on 5 processing elements to scatter centralized graph file brol.grf into 5 gzipped file fragments brol5-0.dgr.gz to brol5-4.dgr.gz. $ mpirun -np 5 dgscat brol.grf brol%p-%r.dgr.gz SEE ALSO dgtst(1), dgord(1), gmk_hy(1). PT-Scotch user's manual. AUTHOR Francois Pellegrini <francois.pellegrini@labri.fr> August 03, 2010 dgscat(1)
NAME | SYNOPSIS | DESCRIPTION | DISTRIBUTED FILE NAMES | OPTIONS | EXAMPLE | SEE ALSO | AUTHOR
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