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LOCARNA-MOTIF-SCAN(1)  User Contributed Perl Documentation LOCARNA-MOTIF-SCAN(1)

NAME
     locarna-motif-scan

SYNOPSIS
     locarna-motif-scan [options] <motif> <seq>

     ATTENTION: some options undocumented

     Options:

	     --help	      brief help message
	     --man	      full documentation
	     --verbose	      be verbose
	     --quiet	      be quiet
	     <motif>	      a dp file describing your motif
	     <seq>	      a fasta file containing the sequence(s)

DESCRIPTION
     The  program  scans  for  a  match  of a RNA "motif", given by a (multiple)
     alignment in a possibly long stretch of D/RNA

     We use a sliding window, fold each window with RNALfold -p and  search  for
     k-best locarna hits in the window The K-best hits are recorded

perl v5.38.2			   2022-10-04		   LOCARNA-MOTIF-SCAN(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=locarna-motif-scan&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>

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