LOCARNA_DEVIATION(1) User Commands LOCARNA_DEVIATION(1) NAME locarna_deviation - manual page for locarna_deviation (LocARNA 2.0.0) SYNOPSIS deviation <aln-file> <ref-aln-file> DESCRIPTION locarna_deviation - compare an alignment to a reference alignment By calculating similarity measures of an alignment to a reference align- ment, this small program based on the locarna library is useful for bench- marking alignment tools. OPTIONS <aln-file> alignment file in clustalw format <aln-ref-file> reference alignment file in clustalw format The sequences of <aln-file> have to be contained in the alignment of <aln-ref-file>. In addition to the deviation, print match sps and shift score locarna_deviation (LocARNA 2.0.0) July 2024 LOCARNA_DEVIATION(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS
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