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LOCARNA...IGN-ALL(1)   User Contributed Perl Documentation  LOCARNA...IGN-ALL(1)

NAME
     locarnap-realign-all

SYNOPSIS
     locarnap-realign-all [options] <annotation-file>

DESCRIPTION
     Calls mlocarna on sequence sets in Realign-Sequences as generated by a call
     to locarnap-revisit-RNAz-hits.pl. The script is usually used as second step
     in a pipeline for refining RNAz hits with LocARNA-P.

OPTIONS
     --help
	 Brief help message

     --man
	 Full documentation

     --test
	 Test only. Jobs are not run or submitted to SGE!

     --revcompl
	 Realign reverse complement

     --run-locally
	 Run the realignment on the local machine (without the use of SGE).

     --threads=k
	 Use <k> threads for multicore support.

     Writes result files to Alignment-Results, takes alignment jobs from annota-
     tion file

     Unless option --run-locally is given, distribute jobs to SGE-cluster, where
     we assume that the script is run on a submission host!

perl v5.38.2			   2022-10-04		    LOCARNA...IGN-ALL(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=locarnap-realign-all.pl&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>

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