MELTEHH(1) meltEHH (VCF statistics) MELTEHH(1) NAME meltEHH SYNOPSIS meltEHH -target 0,1,2,3,4,5,6,7 -pos 10 -file my.phased.vcf -region chr1:1-1000 > STDOUT 2> STDERR DESCRIPTION OPTIONS **meltEHH** provides the data to plot extended haplotype homozygosity (EHH) curves and produces the data to generate the following plot: <img src="https://github.com/vcflib/vcflib/blob/master/examples/example-ehh.png?raw=true" alt="" width=400> **meltEHH** provides the data to plot EHH curves. Output : 4 columns : 1. seqid 2. position 3. EHH 4. ref or alt [0 == ref] Params: required: t,target <STRING> A zero base comma separated list of target individuals corresponding to VCF columns required: r,region <STRING> A tabix compliant genomic range format: "seqid:start-end" or "seqid" required: f,file <STRING> Proper formatted and phased VCF. required: y,type <STRING> Genotype likelihood format: GT,PL,GL,GP required: p,position <INT> Variant position to melt. optional: a,af <DOUBLE> Alternative alleles with frequencies less than [0.05] are skipped. Type: statistics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. meltEHH (vcflib) MELTEHH(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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