NORMALIZE-IHS(1) normalize-iHS (VCF genotype) NORMALIZE-IHS(1) NAME normalize-iHS SYNOPSIS normalizeHS -s 0.01 -f input.txt DESCRIPTION normalizes iHS or XP-EHH scores. OPTIONS A cross-population extended haplotype homozygosity (XP-EHH) score is directional: a positive score suggests selection is likely to have happened in population A, whereas a negative score suggests the same about population B. See for example https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/ Output : **normalize-iHS** adds one additional column to input (normalized score). required: -f -- Output from iHS or XPEHH optional: -s -- Max AF diff for window [0.01] Type: genotype EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. normalize-iHS (vcflib) NORMALIZE-IHS(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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