VCF2FASTA(1) vcf2fasta (VCF transformation) VCF2FASTA(1) NAME vcf2fasta SYNOPSIS vcf2fasta options [file] DESCRIPTION Generates sample_seq:N.fa for each sample, reference sequence, and chromo- somal copy N in [0,1... ploidy]. Each sequence in the fasta file is named using the same pattern used for the file name, allowing them to be com- bined. OPTIONS options: -f, --reference REF Use this reference when decomposing samples. -p, --prefix PREFIX Affix this output prefix to each file, none by default -P, --default-ploidy N Set a default ploidy for samples which do not have information in the first record (2). -n VAL Set string value to output for missing calls Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcf2fasta (vcflib) VCF2FASTA(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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