VCFFLATTEN(1) vcfflatten (VCF transformation) VCFFLATTEN(1) NAME vcfflatten SYNOPSIS vcfflatten [options][file] -h -help display this help message and exit. -i -ignore-errors do not flatten locus if `AF' is not specified. DESCRIPTION Removes multi-allelic sites by picking the most common alternate. Requires allele frequency specification `AF' and use of `G' and `A' to specify the fields which vary according to the Allele or Genotype. VCF file may be specified on the command line or piped as stdin. OPTIONS Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfflatten (vcflib) VCFFLATTEN(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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