VCFGENO2HAPLO(1) vcfgeno2haplo (VCF transformation) VCFGENO2HAPLO(1) NAME vcfgeno2haplo SYNOPSIS vcfgeno2haplo options [] DESCRIPTION Convert genotype-based phased alleles within -window-size into haplotype alleles. Will break haplotype construction when encountering non-phased genotypes on input. OPTIONS options: -h, --help Print this message -v, --version Print version -r, --reference FILE FASTA reference file -w, --window-size N Merge variants at most this many bp apart (default 30) -o, --only-variants Don't output the entire haplotype, just concatenate REF/ALT strings (delimited by ":") Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfgeno2haplo (vcflib) VCFGENO2HAPLO(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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