VCFNULLDOTSLASHDOT(1) Convert VCF . to ./. VCFNULLDOTSLASHDOT(1) NAME vcfnulldotslashdot converts single dots to ./. This is useful for some downstream analysis tools. SYNOPSIS vcf2tsv < file DESCRIPTION vcfnulldotslashdot converts single dots to ./. This is useful for some downstream analysis tools. EXIT VALUES 0 Success not 0 Failure EXAMPLES vcf2tsv converts a VCF to VCF >>> cat("../scripts/vcfnulldotslashdot data/issue_307_vcfnulldotslashdot.vcf") ##fileformat=VCFv4.1 ##fileDate=20210209 ##source=freeBayes v0.9.21 ##reference=ahy.fa ##phasing=none ##filter="TYPE = snp & QUAL > 30 & AF > 0.05 & AF < 0.95 genotypes filtered with: GQ > 20" ##INFO=<ID=AC,Number=A,Type=Integer,Description="Total number of alternate alleles in called genotypes"> ##INFO=<ID=AF,Number=A,Type=Float,Description="Estimated allele frequency in the range (0,1]"> ##INFO=<ID=TYPE,Number=A,Type=String,Description="The type of allele, either snp, mnp, ins, del, or complex."> ##INFO=<ID=LEN,Number=A,Type=Integer,Description="allele length"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT rab-field.AH13 contig71493_103113 50 . G A 79.0603 . AC=5;AF=0.078125;LEN=1;TYPE=snp GT ./.:0,0,0 LICENSE Copyright 2021 (C) Erik Garrison and vcflib contributors. MIT licensed. AUTHORS Erik Garrison and other vcflib contributors. vcfnulldotslashdot VCFNULLDOTSLASHDOT(1)
NAME | SYNOPSIS | DESCRIPTION | EXIT VALUES | EXAMPLES | LICENSE | AUTHORS
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