VCFSAMPLEDIFF(1) vcfsamplediff (VCF transformation) VCFSAMPLEDIFF(1) NAME vcfsamplediff SYNOPSIS vcfsamplediff options [ ... ] DESCRIPTION Establish putative somatic variants using reported differences between germline and somatic samples. Tags each record where the listed sample genotypes differ with . The first sample is assumed to be germline, the second somatic. Each record is tagged with ={germline,somatic,loh} to specify the type of variant given the genotype difference between the two samples. OPTIONS options: -s --strict Require that no observations in the germline support the somatic alternate. Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfsamplediff (vcflib) VCFSAMPLEDIFF(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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