bl_bed_gff3_cmp(3) Library Functions Manual bl_bed_gff3_cmp(3) NAME bl_bed_gff3_cmp() - Compare positions of BED and GFF3 objects LIBRARY #include <biolibc/bed.h> -lbiolibc -lxtend SYNOPSIS int bl_bed_gff3_cmp(bl_bed_t *bed_feature, bl_gff3_t *gff3_feature, bl_overlap_t *overlap) ARGUMENTS bed_feature Pointer to the bl_bed_t structure to compare gff3_feature Pointer to the bl_gff3_t structure to compare overlap Pointer to the bl_overlap_t structure to receive comparison results DESCRIPTION Compare the position of a BED feature to that of a GFF feature. Return 0 if the features overlap, < 0 if the BED feature is upstream of the GFF fea- ture, > 0 if the BED feature is downstream of the GFF feature. If the features overlap, populate the bl_overlap_t structure pointed to by overlap. The structure contains the lengths of the two features, the start and end positions of the overlapping region, and the length of the overlap. Positions in overlap are 1-based and inclusive at both ends (like most bioinformatics formats and unlike BED). RETURN VALUES A value < 0 if the BED feature is upstream of the GFF feature A value > 0 if the BED feature is downstream of the GFF feature 0 if the BED feature overlaps the GFF feature EXAMPLES if ( bl_bed_gff3_cmp(&bed_feature, &gff3_feature, *overlap) == 0 ) SEE ALSO bl_bed_read(3), bl_gff3_read(3) bl_bed_gff3_cmp(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
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