bl_bed_write(3) Library Functions Manual bl_bed_write(3) NAME bl_bed_write() - Write a BED record LIBRARY #include <biolibc/bed.h> -lbiolibc -lxtend SYNOPSIS int bl_bed_write(bl_bed_t *bed_feature, FILE *bed_stream, bed_field_mask_t field_mask) ARGUMENTS bed_feature Pointer to the bl_bed_t structure to output bed_stream FILE stream to which TSV bed line is written field_mask Bit mask indicating which fields to output DESCRIPTION Write fields from one line of a bed file to the specified FILE stream. If field_mask is not BL_BED_FIELD_ALL, only selected fields are written. If field_mask is not BL_BED_FIELD_ALL, fields not indicated by a 1 in the bit mask are written as an appropriate marker for that field, such as a '.', rather than writing the real data. Possible mask values are: BL_BED_FIELD_NAME BL_BED_FIELD_SCORE BL_BED_FIELD_STRAND BL_BED_FIELD_THICK BL_BED_FIELD_RGB BL_BED_FIELD_BLOCK The chrom, start, and end fields are required and therefore have no corre- sponding mask bits. The thickStart and thickEnd fields must occur together or not at all, so only a single bit BL_BED_FIELD_THICK selects both of them. Likewise, blockCount, blockSizes and blockStarts must all be present or omitted, so BL_BED_FIELD_BLOCK masks all three. RETURN VALUES BL_WRITE_OK on success BL_WRITE_ERROR on failure (errno may provide more information) EXAMPLES bl_bed_write(stdout, &bed_feature, BL_BED_FIELD_ALL); bl_bed_write(bed_stream, &bed_feature, BL_BED_FIELD_NAME|BL_BED_FIELD_SCORE); SEE ALSO bl_bed_read(3) bl_bed_write(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
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