bl_fastx_read(3) Library Functions Manual bl_fastx_read(3) NAME bl_fastx_read() - Read a FASTX record LIBRARY #include <biolibc/fastx.h> -lbiolibc -lxtend SYNOPSIS int bl_fastx_read(bl_fastx_t *record, FILE *fastx_stream) ARGUMENTS fastx_stream FILE stream from which FASTA data are read record Pointer to a bl_fastx_t structure to receive data DESCRIPTION Read a FASTA or FASTQ record from a FILE stream by calling bl_read_fasta(3) or bl_read_fastq(3). The bl_fastx_t structure must first be initialized by assigning it BL_FASTX_INIT and calling bl_fastx_init(3). See bl_fasta_read(3) and bl_fastq_read(3) for further details. RETURN VALUES BL_READ_OK upon successful read of description and sequence BL_READ_BAD_DATA if something is amiss with input format BL_READ_EOF if no more data are available EXAMPLES bl_fastx_t rec = BL_FASTX_INIT; bl_fastx_init(stdin, &rec); while ( bl_fastx_read(stdin, &rec) != BL_READ_EOF ) bl_fastx_write(stdout, &rec, BL_FASTX_LINE_UNLIMITED); bl_fastx_free(&rec); SEE ALSO bl_fastx_write(3), bl_fastq_read(3), bl_fastq_write(3), bl_fastx_free(3) bl_fastx_read(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
Want to link to this manual page? Use this URL:
<https://man.FreeBSD.org/cgi/man.cgi?query=bl_fastx_read&sektion=3&manpath=FreeBSD+Ports+15.1.quarterly>