bl_overlap_set_all(3) Library Functions Manual bl_overlap_set_all(3) NAME bl_overlap_set_all() - Set overlap fields for two features LIBRARY #include <biolibc/overlap.h> -lbiolibc -lxtend SYNOPSIS int bl_overlap_set_all(bl_overlap_t *overlap, int64_t feature1_len, int64_t feature2_len, int64_t overlap_start, int64_t overlap_end) ARGUMENTS feature1_len Length of feature 1 feature2_len Length of feature 2 overlap_start Start position of overlap relative to start of feature 1 overlap_end End position of overlap relative to start of feature 1 DESCRIPTION Set all fields in a bl_overlap_t structure. Start and end positions are 1-based regardless of the feature type. (BED file positions are 0-based and must be adjusted before passed to this function.) RETURN VALUES BL_DATA_OK upon success. BL_DATA_INVALID is arguments don't make sense. EXAMPLES bed_start = BL_BED_CHROM_START(bed_feature); bed_end = BL_BED_CHROM_END(bed_feature); gff3_start = BL_GFF3_CHROM_START(gff3_feature); gff3_end = BL_GFF3_CHROM_END(gff3_feature); bed_len = bed_end - bed_start; gff3_len = gff3_end - gff3_start + 1; bl_overlap_set_all(overlap, bed_len, gff3_len, XT_MAX(bed_start+1, gff3_start), XT_MIN(bed_end, gff3_end)); SEE ALSO bl_overlap_print(3) bl_overlap_set_all(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | EXAMPLES | SEE ALSO
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