bl_sam_buff_alignment_ok(3) Library Functions Manual bl_sam_buff_alignment_ok(3) NAME bl_sam_buff_alignment_ok() - Verify alignment quality LIBRARY #include <biolibc/sam-buff.h> -lbiolibc -lxtend SYNOPSIS bool bl_sam_buff_alignment_ok(bl_sam_buff_t *sam_buff, bl_sam_t *sam_alignment) ARGUMENTS sam_buff Pointer to bl_sam_buff_t structure with quality specs sam_alignment Pointer to new alignment DESCRIPTION Verify that an alignment meets the quality requirements for the given SAM buffer. Each bl_sam_buff_t structure contains specifications for minimum quality scores as well as statistics on alignments checked, including the number of discarded alignments and a sum of the alignment scores (for cal- culating the average score of discarded alignments). RETURN VALUES true if the alignment meets the quality requirements false otherwise SEE ALSO bl_sam_buff_check_order(3) bl_sam_buff_alignment_ok(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | SEE ALSO
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