bl_sam_buff_check_order(3) Library Functions Manual bl_sam_buff_check_order(3) NAME bl_sam_buff_check_order() - Check sort order of SAM records LIBRARY #include <biolibc/sam-buff.h> -lbiolibc -lxtend SYNOPSIS void bl_sam_buff_check_order(bl_sam_buff_t *sam_buff, bl_sam_t *sam_alignment) ARGUMENTS sam_buff Pointer to a SAM buffer with recent alignments sam_alignment Pointer to the most recently read alignment DESCRIPTION Check that the newly read SAM alignment comes after the previous one, as- suming the input is sorted first by chrom and then position. The previous chrom and position are stored in sam_buff (and initialized so that the first SAM alignment read is always OK). SEE ALSO bl_sam_read(3) bl_sam_buff_check_order(3)
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