bl_sam_init(3) Library Functions Manual bl_sam_init(3) NAME bl_sam_init() - Initialize all fields of a SAM object LIBRARY #include <biolibc/sam.h> -lbiolibc -lxtend SYNOPSIS void bl_sam_init(bl_sam_t *alignment) ARGUMENTS alignment Pointer to bl_sam_t structure to initialize seq_len Length of sequence and quality strings field_mask Bit mask indicating which fields will be used DESCRIPTION Initialize a bl_sam_t structure, allocating memory for sequence and quality strings according to seq_len. Passing a seq_len of 0 prevents memory allo- cation from occurring. Only BL_SAM_FIELD_SEQ and BL_SAM_FIELD_QUAL are meaningful bits in field_mask, as they determine whether memory is allocated. All other fields are unconditionally initialized to 0, NULL, or blank. SEE ALSO bl_sam_read(3), bl_sam_free(3), bl_sam_copy(3) bl_sam_init(3)
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