Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help 
bl_sam_init(3)		   Library Functions Manual		bl_sam_init(3)

NAME
       bl_sam_init() - Initialize all fields of	a SAM object

LIBRARY
       #include	<biolibc/sam.h>
       -lbiolibc -lxtend

SYNOPSIS
       void    bl_sam_init(bl_sam_t *alignment)

ARGUMENTS
       alignment   Pointer to bl_sam_t structure to initialize
       seq_len	   Length of sequence and quality strings
       field_mask  Bit mask indicating which fields will be used

DESCRIPTION
       Initialize  a  bl_sam_t	structure,  allocating memory for sequence and
       quality strings according to seq_len.  Passing a	seq_len	of 0  prevents
       memory allocation from occurring.

       Only  BL_SAM_FIELD_SEQ  and  BL_SAM_FIELD_QUAL  are  meaningful bits in
       field_mask, as they determine whether memory is allocated.   All	 other
       fields are unconditionally initialized to 0, NULL, or blank.

SEE ALSO
       bl_sam_read(3), bl_sam_free(3), bl_sam_copy(3)

								bl_sam_init(3)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=bl_sam_init&sektion=3&manpath=FreeBSD+Ports+14.3.quarterly>

home | help