bl_sam_write(3) Library Functions Manual bl_sam_write(3) NAME bl_sam_write() - Write a SAM object to a file stream LIBRARY #include <biolibc/sam.h> -lbiolibc -lxtend SYNOPSIS int bl_sam_write(bl_sam_t *alignment, FILE *sam_stream, sam_field_mask_t field_mask) ARGUMENTS sam_stream A FILE stream to which to write the line alignment Pointer to a bl_sam_t structure field_mask Bit mask indicating which fields to store in alignment DESCRIPTION Write an alignment (line) to a SAM stream. If field_mask is not BL_SAM_FIELD_ALL, fields not indicated by a 1 in the bit mask are written as an appropriate placeholder such as '.' rather than stored in alignment. Possible mask values are: BL_SAM_FIELD_ALL BL_SAM_FIELD_QNAME BL_SAM_FIELD_FLAG BL_SAM_FIELD_RNAME BL_SAM_FIELD_POS BL_SAM_FIELD_MAPQ BL_SAM_FIELD_CIGAR BL_SAM_FIELD_RNEXT BL_SAM_FIELD_PNEXT BL_SAM_FIELD_TLEN BL_SAM_FIELD_SEQ BL_SAM_FIELD_QUAL RETURN VALUES Number of items written (per fprintf() output) SEE ALSO bl_sam_read(3) bl_sam_write(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | SEE ALSO
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