bl_vcf_read_ss_call(3) Library Functions Manual bl_vcf_read_ss_call(3) NAME bl_vcf_read_ss_call() - Read a single-sample VCF call LIBRARY #include <biolibc/vcf.h> -lbiolibc -lxtend SYNOPSIS int bl_vcf_read_ss_call(bl_vcf_t *vcf_call, FILE *vcf_stream, vcf_field_mask_t field_mask) ARGUMENTS vcf_stream FILE pointer to VCF input stream vcf_call bl_vcf_t structure to receive VCF data field_mask Bit mask to indicate which fields to store DESCRIPTION Read a single-sample VCF call (static fields and one sample column). This should only be used with VCF inputs that have exactly one sample column. For multisample VCFs, use bl_vcf_read_static_fields() followed by a loop to read the sample data. If field_mask is not BL_VCF_FIELD_ALL, fields not indicated by a 1 in the bit mask are discarded rather than stored in bed_feature. Possible mask values are: BL_VCF_FIELD_ALL BL_VCF_FIELD_CHROM BL_VCF_FIELD_POS BL_VCF_FIELD_ID BL_VCF_FIELD_REF BL_VCF_FIELD_ALT BL_VCF_FIELD_QUAL BL_VCF_FIELD_FILTER BL_VCF_FIELD_INFO BL_VCF_FIELD_FORMAT RETURN VALUES BL_READ_OK upon success BL_READ_TRUNCATED if EOF is encountered while read- ing a call BL_READ_EOF if EOF is encountered between calls as it should be SEE ALSO bl_vcf_read_static_fields(3), tsv_read_field(3) bl_vcf_read_ss_call(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | SEE ALSO
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