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bl_vcf_write_ss_call(3) Library Functions Manual bl_vcf_write_ss_call(3) NAME bl_vcf_write_ss_call() - Write a single-sample VCF call LIBRARY #include <biolibc/vcf.h> -lbiolibc -lxtend SYNOPSIS int bl_vcf_write_ss_call(bl_vcf_t *vcf_call, FILE *vcf_stream, vcf_field_mask_t field_mask) ARGUMENTS vcf_stream FILE pointer to the VCF output stream vcf_call Pointer to the bl_vcf_t structure to output field_mask Bit mask indicating which fields to output DESCRIPTION Write a single-sample VCF call to vcf_stream. This should only be used with VCF calls that have exactly one sample column. For multisample VCFs, use bl_vcf_write_static_fields() followed by a loop to write the sample data. If field_mask is not BL_VCF_FIELD_ALL, fields not indicated by a 1 in the bit mask are written as an appropriate placeholder such as '.' rather than the actual data. Possible mask values are: BL_VCF_FIELD_ALL BL_VCF_FIELD_CHROM BL_VCF_FIELD_POS BL_VCF_FIELD_ID BL_VCF_FIELD_REF BL_VCF_FIELD_ALT BL_VCF_FIELD_QUAL BL_VCF_FIELD_FILTER BL_VCF_FIELD_INFO BL_VCF_FIELD_FORMAT RETURN VALUES The number of items output (as returned by fprintf()) SEE ALSO bl_vcf_read_ss_call(3), bl_vcf_write_static_fields(3) bl_vcf_write_ss_call(3)
NAME | LIBRARY | SYNOPSIS | ARGUMENTS | DESCRIPTION | RETURN VALUES | SEE ALSO
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