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blt(1) General Commands Manual blt(1) NAME blt - Wrapper for all biolibc-tools subcommands SYNOPSIS blt blt subcommand arguments DESCRIPTION blt is a wrapper for biolibc-tools subcommands, which are installed in a private directory in order to avoid conflicts with other programs bearing the same name. Running blt with no arguments lists available subcommands. For each sub- commands there is a man page under the name blt-<subcommand>. awk -F '\t' '{ printf("%s\n%s\n", $1, $2); }' \ file.tsv > file.fasta awk -F '\t' '{ printf("%s\n%s\n%s\n%s\n", $1, $2, $3, $4); }' \ file.tsv > file.fastq EXAMPLES blt version blt chrom-lens < file.fasta blt extract-seq file.gff3 file.fasta feature-type 'search-key' blt fasta2seq < file.fasta > file.seq blt fastx-derep < file.fastq > filtered-file.fastq blt fastx-derep < file.fasta > filtered-file.fasta blt fastx-stats file1.fastq file2.fasta.xz blt fastx2tsv < file.fastq > file.tsv blt fastx2tsv < file.fasta > file.tsv blt fasta2seq < file.fasta | blt find-orfs 0 blt gff3-to-bed < file.gff > file.bed blt vcf-search chr1 23244 < file.vcf blt ensemblid2gene file.gff3 ids.txt > ids-and-gene-names.tsv SEE ALSO blt-chrom-lens(1), blt-extract-seq(1), blt-fasta2seq(1), blt-fastx- derep(1), blt-fastx-stats(1), blt-fastx2tsv(1), blt-fasta2seq(1), blt-find- orfs(1), blt-gff3-to-bed(1), blt-vcf-search(1), blt-ensemblid2gene AUTHOR J. Bacon blt(1)
NAME | SYNOPSIS | DESCRIPTION | EXAMPLES | SEE ALSO | AUTHOR
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