FreeBSD Manual Pages
cif-grep(1) User Commands cif-grep(1) NAME cif-grep - A tool like grep to print fields in mmCIF files that match patterns SYNOPSIS cif-grep [OPTION] pattern file1 [file2..] DESCRIPTION This tool tries to work in a similar way as grep by searching mmCIF files comparing the content of fields to patterns. OPTIONS Multiple files can be specified to search. If a directory name if specified, all files in that directory will be searched. Use the --recursive flag to do a recursive search. --item=<item>, -i <item> Limit the search to only the item specified in <item>. Default is to search all items. Item should be of the form '_category.item' with the leading underscore. --quiet, -q Print only the file names that match the pattern. --count, -c Only show the number of hits. --invert-match, -v Only select the fields that do not match the pattern. --line-number, -n Print the line numbers. --no-filename, -h Do not print the filename. --with-filename, -H Do print the filename. --files-with-matches, -l Print only the names of the files containing matches. --recursive, -r Search recursively. --verbose,-V Be more verbose, useful to diagnose validation errors. AUTHOR Written by Maarten L. Hekkelman <maarten@hekkelman.com> REPORTING BUGS Report bugs at https://github.com/PDB-REDO/cif-tools/issues SEE ALSO cif-diff, cif-merge, cif-validate, cif2pdb, mmCQL, pdb2cif. version 1.0.5 2022-11-20 cif-grep(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | AUTHOR | REPORTING BUGS | SEE ALSO
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=cif-grep&sektion=1&manpath=FreeBSD+Ports+14.3.quarterly>