Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
cif2pdb(1)			  User Commands 		      cif2pdb(1)

NAME
     cif2pdb - Convert the contents of a mmCIF file into PDB format

SYNOPSIS
     cif2pdb [OPTION] input [output]

DESCRIPTION
     This  tools  attempts to write out the contents of a mmCIF file in PDB for-
     mat.

     Note that this will likely drop lots of information that cannot  be  repre-
     sented  in  PDB format and might even fail completely due to too many atoms
     or other overruns.

     Like most of the other cif-tools this file can read compressed mmCIF  files
     directly.

OPTIONS
     If no output file is given, the result is printed to /fIstdout.

     --dict=<file>
	    The mmCIF dictionary file to use. The default is mmcif_pdbx.

     --no-validate
	    Omit  the validation of the input mmCIF file. This will force output
	    even in case the input file contains errors.

     --verbose,-V
	    Be more verbose, useful to diagnose validation errors.

AUTHOR
     Written by Maarten L. Hekkelman <maarten@hekkelman.com>

REPORTING BUGS
     Report bugs at https://github.com/PDB-REDO/cif-tools/issues

SEE ALSO
     cif-diff, cif-grep, cif-merge, cif-validate, mmcql, pdb2cif.

version 2.0.0			   2022-11-20			      cif2pdb(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=cif2pdb&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>

home | help