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FASDA-PVAL-SIM(1) General Commands Manual FASDA-PVAL-SIM(1) NAME fasda pval-sim - Generate simulated counts and compute P-values SYNOPSIS fasda pval-sim count1-mean count2-mean max-deviation replicates trials DESCRIPTION The fasda pval-sim command attempts generates random counts based on count1-mean, count2-mean, max-deviation, and replicates. The first set of counts is in the range count1-mean +/- count1-mean * max-deviation, with a uniform random distribution. The second sets of counts is count2-mean +/- count2-mean * max-deviation. There will be replicates counts in each set, so a total of 2 * replicates counts. pval-sim then computes the exact (replicates < 5), near-exact (5 <= repli- cates <= 10) and/or Mann-Whitney (replicates >= 8) P-values for the gener- ated counts. If trials > 1, the experiment is repeated with new counts. SEE ALSO fasda-abundance(1), fasda-fold-change(1), fasda-normalize(1) BUGS Please report bugs to the author and send patches in unified diff format. (man diff for more information) AUTHOR J. Bacon FASDA-PVAL-SIM(1)
NAME | SYNOPSIS | DESCRIPTION | SEE ALSO | BUGS | AUTHOR
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