LOCARNA-MOTIF-SCAN(1) User Contributed Perl Documentation LOCARNA-MOTIF-SCAN(1) NAME locarna-motif-scan SYNOPSIS locarna-motif-scan [options] <motif> <seq> ATTENTION: some options undocumented Options: --help brief help message --man full documentation --verbose be verbose --quiet be quiet <motif> a dp file describing your motif <seq> a fasta file containing the sequence(s) DESCRIPTION The program scans for a match of a RNA "motif", given by a (multiple) alignment in a possibly long stretch of D/RNA We use a sliding window, fold each window with RNALfold -p and search for k-best locarna hits in the window The K-best hits are recorded perl v5.38.2 2022-10-04 LOCARNA-MOTIF-SCAN(1)
NAME | SYNOPSIS | DESCRIPTION
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