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LOCARNA_DEVIATION(1)		  User Commands 	    LOCARNA_DEVIATION(1)

NAME
     locarna_deviation - manual page for locarna_deviation (LocARNA 2.0.0)

SYNOPSIS
     deviation <aln-file> <ref-aln-file>

DESCRIPTION
     locarna_deviation - compare an alignment to a reference alignment

     By  calculating  similarity  measures of an alignment to a reference align-
     ment, this small program based on the locarna library is useful for  bench-
     marking alignment tools.

OPTIONS
     <aln-file>
	    alignment file in clustalw format

     <aln-ref-file>
	    reference alignment file in clustalw format

     The  sequences  of  <aln-file>  have  to  be  contained in the alignment of
     <aln-ref-file>.

     In addition to the deviation, print match sps and shift score

locarna_deviation (LocARNA 2.0.0)   July 2024		    LOCARNA_DEVIATION(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=locarna_deviation&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>

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