LOCARNA...IGN-ALL(1) User Contributed Perl Documentation LOCARNA...IGN-ALL(1) NAME locarnap-realign-all SYNOPSIS locarnap-realign-all [options] <annotation-file> DESCRIPTION Calls mlocarna on sequence sets in Realign-Sequences as generated by a call to locarnap-revisit-RNAz-hits.pl. The script is usually used as second step in a pipeline for refining RNAz hits with LocARNA-P. OPTIONS --help Brief help message --man Full documentation --test Test only. Jobs are not run or submitted to SGE! --revcompl Realign reverse complement --run-locally Run the realignment on the local machine (without the use of SGE). --threads=k Use <k> threads for multicore support. Writes result files to Alignment-Results, takes alignment jobs from annota- tion file Unless option --run-locally is given, distribute jobs to SGE-cluster, where we assume that the script is run on a submission host! perl v5.38.2 2022-10-04 LOCARNA...IGN-ALL(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS
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