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LOCARNAP_FIT(1) 		  User Commands 		 LOCARNAP_FIT(1)

NAME
     locarnap_fit - manual page for locarnap_fit (LocARNA 2.0.0)

DESCRIPTION
     locarnap_fit - Fit a two step function to a data series.

     USAGE: locarnap_fit [options]

     This  tool  predicts signals-regions in a profile. It is used by the script
     reliability-profile.pl for predicting the boundaries of ncRNAs.

OPTIONS
     -h, --help
	    This help

     -V, --version
	    Version info

     -v, --verbose
	    Verbose

     -d, --delta=<float>(0.5)
	    Penalty for state change

     -b, --beta=<float>(6)
	    Inverse temperature

     --once-on
	    Fit a signal that is on only once

     --all-values
	    Show all function values of signal (instead of only ranges)

     -p, --penalties=<file>
	    Input penalty file with sequence of numbers

REFERENCES
     Sebastian Will, Tejal Joshi, Ivo L. Hofacker, Peter F.  Stadler,  and  Rolf
     Backofen. LocARNA-P: Accurate boundary prediction and improved detection of
     structural    RNAs.    RNA,    18	 no.   5   pp.	 900-914,   2012.   doi:
     10.1261/rna.029041.111

REPORTING BUGS
     Report bugs to <will (at) informatik.uni-freiburg.de>.

locarnap_fit (LocARNA 2.0.0)	    July 2024			 LOCARNAP_FIT(1)

Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=locarnap_fit&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>

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