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MINCPIK(1) User Contributed Perl Documentation MINCPIK(1) NAME mincpik - generate images from minc files SYNOPSIS mincpik [options] <infile>.mnc [<image.type>] mincpik generates image files from MINC volumes using the Imagemagick convert utility. Use -help or -man for more information and examples DESCRIPTION mincpik generates image files from MINC volumes using the Imagemagick convert utility. For a complete list of output file types see the convert man pages. EXAMPLES: To display a default view, axial (z) slicing, middle slice using display. (display is part of the Imagemagick package) mincpik infile.mnc PNG:- | display - To generate a PNG file of the 15th coronal slice mincpik -slice 15 -coronal infile.mnc outfile.png To generate a JPG file using the hotmetal lookup table with the image range 0 to 100 mincpik -lookup '-hotmetal' -image_range 0 100 infile.mnc outfile.jpg ImageMagick: http://www.wizards.dupont.com/cristy/ImageMagick.html NB: ImageMagick should be compiled without 16-bit quanta. Currently if there is a time dimension in the file the image will only produced from the first time point Problems or comments should be sent to: a.janke\@gmail.com OPTIONS -v, --verbose Be noisy when doing things --version Print version number and exit -?, --help Dump some quick help output --man Dump a man page -c --clobber overwrite the output file if it exists already -f --fake do a dry run, (echo cmds only). This is usually used in combination with -verbose to echo commands only --scale scaling factor for resulting image, by default images are output at twice their original resolution --width autoscale the resulting image to have a fixed image width (in pixels) --depth bitdepth for resulting image 8 or 16 (MSB machines only!) --title add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file. --title_text use the input string for the title [default: input-filename]. This option must be used in conjunction with -title --title_size font point size for the title --anot_bar create an annotated bar to match the image (use height of the output image) Image range and lookup table options --range valid range of values for MINC file --image_range range of image values to use for pixel intensity --auto_range automatically determine image range using a 5 and 95% PcT. (histogram) --lookup arguments to pass to minclookup Slicing options -s --slice slice number to get. (note this is in voxel co-ordinates) -z --axial --transverse get an axial/transverse (z) slice -y --coronal get a coronal (y) slice -x --sagittal get a sagital (x) slice Triplanar options -t --triplanar create a triplanar view of the input file --tilesize pixel size for each image in a triplanar --sagittal_offset offset the sagittal slice from the centre --sagittal_offset_perc offset the sagittal slice by a percentage from the centre --vertical create a vertical triplanar view (Default) --horizontal create a horizontal triplanar view SEE ALSO convert(1) mincextract(1) display(1) AUTHOR Andrew Janke - a.janke@gmail.com COPYRIGHTS Copyright 2012 by Andrew L Janke perl v5.42.0 2026-02-28 MINCPIK(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | SEE ALSO | AUTHOR | COPYRIGHTS
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