nii2mnc(1) nii2mnc(1) NAME nii2mnc - convert a NIfTI-1 or Analyze 7.5 format file to a MINC format file. SYNOPSIS nii2mnc [<options>] <infile> <outfile.mnc> nii2mnc -help DESCRIPTION The nii2mnc command is used to convert "NIfTI-1" format files to MINC for- mat. The NIfTI-1 format was developed by the members of the Neuroinformat- ics Technology Initiative's Data Format Working Group (DFWG). The NIfTI-1 format is based upon the Mayo Clinic's Analyze 7.5 format. The name of the program is derived from the common filename suffixes used for NIfTI-1 and MINC files. NIfTI-1 defines two possible formats, a "header plus raw image" 2-file format, and a single-file format that in- cludes both header information and the image data. As with Analyze 7.5, the 2-file format consists of one file with the suffix ".hdr" and another file with the extension ".img". In NIfTI-1 single-file format, the two files may be combined into a single file with a ".nii" filename suffix. OPTIONS Note that options can be specified in abbreviated form (as long as they are unique) and can be given anywhere on the command line. Output voxel format -float Save voxels in 32-bit floating point format -double Save voxels in 64-bit floating point format -byte Save voxels in 8-bit integer format -short Save voxels in 16-bit integer format -int Save voxels in 32-bit integer format -signed Save voxels in signed (2's complement) integer format -unsigned Save voxels in unsigned integer format Analyze 7.5 specific options -transverse Assume data is in ZYX dimension order. -sagittal Assume data is in XZY dimension order. -coronal Assume data is in YZX dimension order. -xyz Assume data is in XYZ dimension order. -zxy Assume data is in ZXY dimension order. -yxz Assume data is in YXZ dimension order. -flipx, -flipy, -flipz Invert the samples along the given axis. Other options -noscanrange Don't scan data to determine valid range. -quiet Quiet operation - do not print progress or debugging information. Generic options for all commands -help Print summary of command-line options and abort -version Print the program and library versions and abort KNOWN BUGS Current handling of NIfTI-1 qform and sform coordinate transforms should probably be revised as the NIfTI group clarifies the correct usage of these fields. SEE ALSO mnc2nii AUTHOR Robert Vincent (bert@bic.mni.mcgill.ca) with assistance from the NIfTI-1 library authored by Robert Cox et al. COPYRIGHTS Copyrights 2005 by Robert Vincent for the Montreal Neurological Institute. $Revision: 1.4 $ Apr 22 2005 nii2mnc(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | Output voxel format | Analyze 7.5 specific options | Other options | Generic options for all commands | KNOWN BUGS | SEE ALSO | AUTHOR | COPYRIGHTS
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