PLOTHAPS(1) plotHaps (VCF statistics) PLOTHAPS(1) NAME plotHaps SYNOPSIS DESCRIPTION plotHaps provides the formatted output that can be used with `bin/plotHap- lotypes.R'. OPTIONS Output : haplotype matrix and positions **plotHaps** --target 0,1,2,3,4,5,6,7 --file my.phased.vcf.gz required: t,target -- argument: a zero base comma separated list of target individuals corrisponding to VCF column s required: r,region -- argument: a tabix compliant genomic range : "seqid:start-end" or "seqid" required: f,file -- argument: proper formatted phased VCF file required: y,type -- argument: genotype likelihood format: PL,GP,GP Type: statistics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. plotHaps (vcflib) PLOTHAPS(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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