FreeBSD Manual Pages
PP2DOT(1) User Contributed Perl Documentation PP2DOT(1) NAME pp2dot SYNOPSIS pp2dot [options] ]infile.pp outfile_dp.ps DESCRIPTION Convert an (extended) pp file to a dot plot file (like produced by RNAfold -p). pp is a locarna proprietary format for representing dot plots. Reads pp file from infile.pp and write dotplot file to outputfile_dp.ps A pp-file has the following structure [SCORE: X] <name1> <seq1> . . . <nameK> <seqK> # <i1> <j1> <p1> [<p2> [<w1> [<w2>]]] The script accepts up to four weights per base pair in the pp file. Missing weights are considered to be 0. The script draws p1 as the size of a dot in the upper right triangle and w1 as its color. p2 and w2 are visualized accordingly in the lower left triangle. The color palette is controlled by options. OPTIONS --colors P Color palette. Use --colors2 to define a second palette for the lower- left triangle. Default: "black","cyan","green","yellow","red" --colors2 P Color palette for lower left triangle. --help Brief help message --man Full documentation perl v5.32.1 2022-11-19 PP2DOT(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=pp2dot&sektion=1&manpath=FreeBSD+Ports+15.0>