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PS_LAV(1) General Commands Manual PS_LAV(1) NAME ps_lav [-B] [-Z db_size] - plot an "lav" file in postscript. DESCRIPTION ps_lav is a simple program to take "lav" format output from "lalign35" and produce postscript alignment plots (which look like "dot-plots"). It was designed to work with the output of the lalign35 program, but should work with other lav output as well. -B color alignment lines using the "bit" score. -Z db_size set the effective database size for an E()-value calculate to db_size, and color alignment lines using E()-values. Requires bit scores in the lav ouput. AUTHOR Bill Pearson wrp@virginia.EDU local PS_LAV(1)
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