FreeBSD Manual Pages
RSS(1) General Commands Manual RSS(1) NAME randseq - randomly shuffle a protein or DNA sequence SYNOPSIS randseq [ -w # -O file ] sequence-file-1 randseq [-w # -O] - interactive mode DESCRIPTION randseq produces a shuffled amino acid or DNA sequence with the same length and composition as the input sequence. randseq uses the same shuffling algorithm as prss and prdf. Shuffled sequences can be used to evaluate the accuracy of the statistical estimates produced by BLAST, FASTA, or SSEARCH. Searches done with a randomly shuffled se- quence should have an expectation value around 1.0 (BLASTP p-value = 0.63). EXAMPLES randseq -w 20 mgstm1.aa > mgstm1.raa Shuffle the sequence in "mgstm1.aa" using a local window of length 20 and send the output to "mgstm1.raa". OPTIONS -w # use local window for shuffle with window size #. -O file send output to file. AUTHOR Bill Pearson wrp@virginia.EDU local RSS(1)
NAME | SYNOPSIS | DESCRIPTION | EXAMPLES | OPTIONS | AUTHOR
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=randseq&sektion=1&manpath=FreeBSD+Ports+15.0>