SEGMENTIHS(1) segmentIhs (VCF statistics) SEGMENTIHS(1) NAME segmentIhs SYNOPSIS segmentFst -s 2 -f iHS.normalized.output.txt DESCRIPTION Creates genomic segments (bed file) for regions with high wcFst OPTIONS Output : 8 columns : 1. Seqid 2. Start (zero based) 3. End (zero based) 4. Average iHS 5. Average high Fst (iHS > -s) 6. N iHS values in segment 7. N high iHS values in segment 8. Segment length required: -f -- Output from normalizeIHS optional: -s -- High absolute iHS cutoff [2] Type: statistics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. segmentIhs (vcflib) SEGMENTIHS(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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