FreeBSD Manual Pages
VCF2FASTA(1) vcf2fasta (VCF transformation) VCF2FASTA(1) NAME vcf2fasta SYNOPSIS vcf2fasta options [file] DESCRIPTION Generates sample_seq:N.fa for each sample, reference sequence, and chromosomal copy N in [0,1... ploidy]. Each sequence in the fasta file is named using the same pattern used for the file name, allowing them to be combined. OPTIONS options: -f, --reference REF Use this reference when decomposing samples. -p, --prefix PREFIX Affix this output prefix to each file, none by default -P, --default-ploidy N Set a default ploidy for samples which do not have information in the first record (2). -n VAL Set string value to output for missing calls Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcf2fasta (vcflib) VCF2FASTA(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=vcf2fasta&sektion=1&manpath=FreeBSD+Ports+15.0>