VCFENTROPY(1) vcfentropy (VCF metrics) VCFENTROPY(1) NAME vcfentropy SYNOPSIS vcfentropy options DESCRIPTION Annotate VCF records with the Shannon entropy of flanking sequence. Ano- tates the output VCF file with, for each record, EntropyLeft, EntropyRight, EntropyCenter, which are the entropies of the sequence of the given window size to the left, right, and center of the record. Also adds EntropyRef and EntropyAlt for each alt. OPTIONS options: -f, --fasta-reference FASTA reference file to use to obtain flanking sequences -w, --window-size Size of the window over which to calculate entropy Type: metrics EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfentropy (vcflib) VCFENTROPY(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
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