VCFNULLGENOFIELDS(1) vcfnullgenofields (VCF transformation) VCFNULLGENOFIELDS(1) NAME vcfnullgenofields SYNOPSIS vcfnullgenofields options DESCRIPTION Makes the FORMAT for each variant line the same (uses all the FORMAT fields described in the header). Fills out per-sample fields to match FORMAT. Expands GT values of `.' with number of alleles based on ploidy (eg: `./.' for dipolid). OPTIONS options: -p, --ploidy N the polidy of missing/null GT fields (default=2) -L, --expand_GL fill in missing GL fields with 0 values (eg: 0,0,0 for diploid 2 alleles) Type: transformation EXIT VALUES 0 Success not 0 Failure SEE ALSO vcflib(1) OTHER LICENSE Copyright 2011-2025 (C) Erik Garrison and vcflib contributors. MIT li- censed. Copyright 2020-2025 (C) Pjotr Prins. AUTHORS Erik Garrison and vcflib contributors. vcfnullgenofields (vcflib) VCFNULLGENOFIELDS(1)
NAME | SYNOPSIS | DESCRIPTION | OPTIONS | EXIT VALUES | SEE ALSO | OTHER | LICENSE | AUTHORS
Want to link to this manual page? Use this URL:
<https://man.freebsd.org/cgi/man.cgi?query=vcfnullgenofields&sektion=1&manpath=FreeBSD+Ports+15.1.quarterly>